Tag Archives: Birds

How to DNA sex birds.

The males and females of many bird species are difficult to distinguish by their appearance (peacocks are a notable exception). There are many situations where it is useful to know the sex of birds including captive breeding programmes, behavioural studies and even species delimitation in extinct taxa.

DNA sexing provides a simple and quick way to determine which birds are females and which are males. We have been using this technique for some of our bird research projects, including our study of the prion wreck of 2011. For our prion study we want to determine whether there is a gender bias in the birds that were wrecked.

So how does DNA sexing work for birds? By way of background, birds have a different chromosome system to us for determining their sex. In mammals, including us, males have an X and a Y chromosome and females have two X chromosomes. In contrast, birds have a ZW sex-determination system whereby males have two Z chromosomes and females both Z and W chromosomes.

Sex chromosomes in birds and mammals.

Sex chromosomes in birds and mammals. Figure credit: Lara Shepherd

To genetically sex a bird, DNA is first obtained from a blood, feather or tissue sample. We used tongue samples for the prions.

From these DNA samples we made lots of copies of the CHD region, a gene that occurs on both the Z and W chromosomes. Our processing of these gene copies produces a single DNA band for males (because they only have one type of chromosome) and two bands for females (representing the different CHD copies from the Z and W chromosomes).

Prion sex assignment based on the CHD region. Females have two DNA bands – the top band is from the W chromosome and the lower band is from the Z chromosome. Males just have the single Z chromosome band. The lane on the far left with multiple bands contains a size standard  with bands of DNA of known size. Photo credit Lara Shepherd

Prion sex assignment based on the CHD region. Females have two DNA bands – the top band is from the W chromosome and the lower band is from the Z chromosome. Males just have the single Z chromosome band. The lane on the far left with multiple bands contains a size standard with bands of known size. Photo credit Lara Shepherd

DNA sexing is also possible for humans, albeit using a modified method suited to our X/Y chromosome system, and is routinely used in forensics. A recent example is the detection of female DNA on the bombs used in the Boston marathon bombing.

Our far South – Antipodes and Bounty Islands: dots of importance

I awoke on the morning of 6 March to discover that we had very rapid progress over night and were approaching the rugged columnular basalt cliffs of the Antipodes Island, crowned with green tussocks. The home to the Antipodean albatross,the Antipodes Island parakeet and the erect-crested penguin (to name just a few of the birds!). It is almost pest free, but sadly mice still live in this barren place.

Bounty Island shag. Photo Anton van Helden, copyright Te Papa.

Furseal. Photo Anton van Helden, copyright Te Papa.

The only native mammals found on shore here are elephant seals and the New Zealand and Sub-Antarctic furseals. 1804 saw the first sealing gang arrive at the Antipodes. This American gang killed about 60,000 seals over the course of the year they were stationed on the islands. While the location of prime sealing grounds was jealously guarded at the time, the evidence they took home led to a sealing boom on the islands.

After 1807 sealing was occasional and catches small. By the 1830s seals were all but wiped out and sealing in the Antipodes came to an end.

Incredibly sealing in the Southern oceans saw some 7 million furseals (Arctocephalus spp.) were killed for their skins. Essentially by 1830 all populations of furseals were so depleted to make fursealing unecomonic.

Bounty Island shag. Photo Anton van Helden, copyright Te Papa.

Populations of furseals have bounced back, but interestingly it seems that the Bounty Islands may be the main breeding area with the Antipodes islands being primarily a haul-out area.

The erect-crested penguins endemic to the islands, and like many penguin species, they are showing signs of decline.

Once again after a night of travel we found ourselves in the early hours of the morning at our next location, the jagged and totally inhospitable looking Bounty islands.

Bounty Islands.

These are projections of rock sticking out of the sea, yet home to numerous furseals, Salvin’s albatross and their very own shag.

Sadly we could not go ashore on Spider island in the group to look for the species of Spider that Phil Sirvid would have liked me to collect.

Sadly our trip now is coming to an end and this will be my last blog post from the boat. It will be weird to be on land again in just a couple of days.

Salvin’s albatross. Photo Anton van Helden, copyright Te Papa.

Riders of the storm – thousands of seabirds perish on New Zealand shores

It started as a trickle and soon developed into a flood of devastating proportions. On 11 July 2011 I received an email enquiry from a family at Waikanae seeking help with identifying an unusual seabird that they had found dead on their driveway. It was a Salvin’s prion, a not-too-unexpected discovery near the coast during a winter storm. But the next day a Department of Conservation colleague phoned from Masterton reporting a dozen live prions found scattered inland in the Wairarapa, on the sheltered (eastern) side of the Tararua Range. If that number had reached the leeside, what was happening of the exposed western coast? It didn’t take long to find out.

By 14 July over a thousand live prions had been handed in to wildlife care centres in Wellington and Manawatu, an alarming number given that during prion ‘wrecks’, only a tiny fraction of the birds are still alive by the time they reach land. But what is a prion? and why do they wreck?

Fig. 1. Some of the 660+ stranded prions delivered to Wellington Zoo. These are all broad-billed prions. Photo: Colin Miskelly. Copyright Te Papa

Prions (the singular is pronounced ‘pry-on’) are a group of six small closely-related seabirds that are hugely abundant in southern oceans. They are petrels, and like most petrels, typically breed in enormous colonies on remote islands free of introduced predators. They should not be confused with the other use of the word (in this case pronounced ‘pree-on’) used for a particularly nasty group of infectious proteins that cause the brain-wasting Creutzfeldt–Jakob disease in humans, plus mad-cow disease, and scrapie in sheep.

All prion (bird) species are very similar in size and plumage markings, with the most obvious difference being bill shape, which varies from broad through to narrow or chunky. Within this continuum of variation, some pairs of species are very difficult to distinguish from each other. 

Fig. 2. Bill shapes of four species of prions. Left to right: broad-billed prion, Salvin’s prion, Antarctic prion and fairy prion. Photo: Colin Miskelly. Copyright Te Papa.

The three species with the widest bills have prominent lamellae (comb-like structures) along the edge of the upper mandible, used to filter tiny crustaceans and other small animals and their eggs from sea-water. When combined with a muscular tongue and an extendible pouch below the bill, these adaptations recall those of baleen whales, which feed in a similar way. Perhaps this is why prions are sometimes referred to as ‘whale-birds’. 

Fig. 3. Lamellae (comb-like filters on the edge of the upper mandible) on a broad-billed prion. Photo: Colin Miskelly. Copyright Te Papa.

Prions are well known to New Zealand birdwatchers, even if they are frustratingly difficult to distinguish at sea. Members of the Ornithological Society of New Zealand have for many years patrolled the New Zealand coastline recording the numbers and identities of birds cast ashore. For many, this is the only way to become familiar with prions, particularly in those years when large multi-species wrecks occur. The results of these ‘beach patrols’ are occasionally published in the OSNZ’s journal Notornis. Between 1960 and 1996, over 86,000 prions were found dead on New Zealand beaches; large wrecks occurred in 1961, 1970, 1974, 1975, 1984-86 and 2002, with over 10,000 birds cast ashore in 1974, 1985 and 2002. Earlier wrecks occurred in 1878, 1918 and 1932.

Like all petrels, prions are true seabirds, spending their entire lives at sea apart from the 4 months when they are tied to a nesting burrow and the care of their single egg and resultant chick. At other times they are constantly on the move, often in vast flocks, skimming the waves of the southern oceans in search of productive upwellings. Although frail-looking, they thrive in a part of the globe renown for strong winds. Until they encounter land… 

Fig. 4. A flock of Antarctic prions near South Georgia in the South Atlantic Ocean. Photo: Colin Miskelly. Copyright Colin Miskelly.

Prions move with the wind, using the varying airspeeds on the windward and leeward sides of waves to fly long distances with great energetic efficiency. There are few land masses in the southern ocean, and it is usually easy for flocks of prions to slide around the few obstacles that present. Except, that is, for the 1500 km coast of New Zealand. For ten consecutive days in July 2011, persistent westerly gales in the Tasman Sea pushed prions against New Zealand’s western shores. To start with, the birds moved effortlessly with the wind. Then as land loomed, they started to fight the wind, trying to stay offshore. But the relentless gale continued, consuming the birds’ energy until they were exhausted and driven ashore in tens of thousands.

Although there is a long history of prion wrecks on New Zealand beaches, the scale of the 2011 wreck is unprecedented. Far more prions have been killed in this single event than the 37-year total recorded by the OSNZ. Details are still being collected and collated, but large numbers have been found from at least Dargaville to Okarito, 900 km apart. In places they have stranded at rates over 400 birds per kilometre of coast. And that ignores the birds blown inland.

Even more alarming is that nearly all the birds are broad-billed prions (91% estimated), a locally-breeding species. The two previous largest wrecks of broad-billed prions were between 1100 and 1400 birds. It will be difficult to estimate the full extent of the 2011 wreck, but it is likely to be up to 250 times larger than either the 1961 or 1974 events. 

Fig. 5. Beach-wrecked broad-billed prions, Paekakariki (Wellington west coast), 16 July 2011. Photo: Colin Miskelly. Copyright Te Papa.

Desperate efforts are being made to save some of the birds, including a combined total of over 1000 being hand-fed at Wellington Zoo and Massey University. As the birds are exhausted and emaciated from their struggle against the gale, it is terribly difficult to revive them, and hundreds of those delivered have since died.  

Fig. 6. A rescued broad-billed prion being fed at Wellington Zoo. Photo: Colin Miskelly. Copyright Te Papa.

The 2011 prion wreck will have wreaked a terrible toll on the New Zealand broad-billed prion population. The species also occurs in the South Atlantic, but the birds in New Zealand waters are thought to come from the breeding populations on the Chatham Islands, Snares Islands, and islands around Stewart Island and off the Fiordland coast. Apart from the 330,000 pairs estimated on Rangatira Island in the Chatham Islands, none of these other populations are thought to number more than a few thousand pairs. The total New Zealand population is likely to be little more than a million birds, and so the tragic deaths of (probably) several hundred thousand of them will have a huge impact, especially if the birds in the Tasman Sea were mainly from the less numerous southern (non-Chatham) populations. 

Fig. 7. The calm before the storm – healthy broad-billed prions on Kundy Island, off Stewart Island, March 2011. Photo: Colin Miskelly. Copyright Te Papa.
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